Convert a netcdf file to geojson

The previously installed libraries must be:

library("terra")
library("geojsonio")

Open several netcdf files and transform it to lat/lon projection and transform it to polygon. The files are located in the data folder:

nc <- rast(c("./data/WRFDETAR_01H_20240101_12_000.nc",
             "./data/WRFDETAR_01H_20240101_12_001.nc",
             "./data/WRFDETAR_01H_20240101_12_002.nc",
             "./data/WRFDETAR_01H_20240101_12_003.nc"))

T2.positions <- which(names(nc) == "T2")

T2.nc <- nc[[T2.positions]]

T2.nc.repro <- project(T2.nc, "+proj=longlat +datum=WGS84")

T2.polygons <- lapply(T2.nc, as.polygons)

Finally, a shp file is written and the file_to_geojson function is used to create the geojson file for each time:

for (i in 1:4){
  writeVector(T2.polygons[[i]], paste0("temps_", i, ".shp"), overwrite = TRUE)

  s <- file_to_geojson(paste0("temps_", i, ".shp"), method = "local",
                       output = paste0("temps_", i))
}
## Success! File is at temps_1.geojson
## Success! File is at temps_2.geojson
## Success! File is at temps_3.geojson
## Success! File is at temps_4.geojson

View geojson in Leaflet map

The previously installed libraries must be:

library("sf")
library("leaflet")

First the geojson to be graphed is opened:

T2.geojson <- read_sf("temps_1.geojson")

Finally, the geojson variable is graphed, in this case temperature:

pal <- colorNumeric("viridis", NULL)

mapa <- leaflet(T2.geojson) %>%
  addTiles() %>%
  addPolygons(stroke = FALSE, smoothFactor = 0.8, fillOpacity = 0.7,
              fillColor = ~pal(T2),
              label = ~paste0(T2, ": ", formatC(T2, big.mark = ","))) %>%
  addLegend(pal = pal, values = ~T2, opacity = 1.0)

mapa

Ploting MCD12Q1 MODIS Product

The data is available in data folder. First, open the data with terra package

list.pathname <- list.files("./data", pattern = "hdf", full.names = TRUE)

data <- lapply(list.pathname, FUN = rast)

Now, creation of mosaic with each hdf.

data.mosaic <- mosaic(data[[1]], data[[2]], data[[3]], data[[4]], data[[5]], data[[6]], data[[7]], data[[8]], data[[9]])
## 
|---------|---------|---------|---------|

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=======
                                          

|---------|---------|---------|---------|
====
                                          
=
|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          
=
|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          
=
|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
=======
                                          

|---------|---------|---------|---------|
=======
                                          

|---------|---------|---------|---------|
=======
                                          

|---------|---------|---------|---------|
=======
                                          
=
|---------|---------|---------|---------|
=======
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
======
                                          
=
|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
=====
                                          
=
|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          
=
|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
======
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=
|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=====
                                          

|---------|---------|---------|---------|
=========================================
                                          

|---------|---------|---------|---------|
=========================================
                                          
=

Lastly, ploting of data with no change of projection, the numbers represent soil type

plot(data.mosaic$LC_Type1)

If the projection should be in longlat run:

data.mosaic.repro <- project(data.mosaic$LC_Type1, "+proj=longlat +datum=WGS84", method = "bilinear")
## 
|---------|---------|---------|---------|
=========================================

And plot again:

plot(data.mosaic.repro)